5  OrthoGuide: Pre-computed Gene Rooting Data

6 OrthoGuide: Pre-computed Gene Rooting Data

OrthoGuide is available at https://dalmolingroup.imd.ufrn.br/orthoguide/ and provides immediate access to high-quality, pre-computed rooting data for 8 species. Instead of running complex analyses, users can query this database and get the information they need in seconds, along with a few exploratory plots.

6.1 How OrthoGuide Works

All data in the database is generated using the GeneBridge R package (v0.99.2). The gene-to-COG (Clusters of Orthologous Groups) information was obtained from STRING-db version 11.0.